Amjad Syed
2018-04-29 06:20:39 UTC
Hello,
I have a researcher who has submitted number of job scripts where i
concatenate large number of files into one large file and then run an
application on this concatentated file
E.g of 1
cat <file1><file2> ...<filen> > PBS_O_WORKDIR/catfile1
bwa -m PBS_O_WORKDIR/catfile1
The command<bwa> is same, but different input file.
Can we use job array for this type of job script. ? Or is there any other
way to optimize it ?
I have a researcher who has submitted number of job scripts where i
concatenate large number of files into one large file and then run an
application on this concatentated file
E.g of 1
cat <file1><file2> ...<filen> > PBS_O_WORKDIR/catfile1
bwa -m PBS_O_WORKDIR/catfile1
The command<bwa> is same, but different input file.
Can we use job array for this type of job script. ? Or is there any other
way to optimize it ?